Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC120057.1-201ENST00000483947 663 ntBASIC31.46■■■□□ 2.63
MSH5O43196 AC019171.1-201ENST00000601251 1056 ntBASIC31.46■■■□□ 2.63
MSH5O43196 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.46■■■□□ 2.63
MSH5O43196 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
MSH5O43196 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC31.45■■■□□ 2.63
MSH5O43196 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
MSH5O43196 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC31.45■■■□□ 2.62
MSH5O43196 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC31.44■■■□□ 2.62
MSH5O43196 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC31.44■■■□□ 2.62
MSH5O43196 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH5O43196 MIR638-201ENST00000385237 100 ntBASIC31.44■■■□□ 2.62
MSH5O43196 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
MSH5O43196 MIR4787-201ENST00000607364 84 ntBASIC31.44■■■□□ 2.62
MSH5O43196 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH5O43196 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH5O43196 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC31.44■■■□□ 2.62
MSH5O43196 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
MSH5O43196 AL359504.2-201ENST00000605506 1601 ntBASIC31.43■■■□□ 2.62
MSH5O43196 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
MSH5O43196 RARA-203ENST00000394086 2008 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH5O43196 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
MSH5O43196 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.43■■■□□ 2.62
MSH5O43196 RN7SL602P-201ENST00000578326 324 ntBASIC31.43■■■□□ 2.62
MSH5O43196 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC31.43■■■□□ 2.62
MSH5O43196 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
MSH5O43196 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
MSH5O43196 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
MSH5O43196 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
MSH5O43196 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.42■■■□□ 2.62
MSH5O43196 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
MSH5O43196 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
MSH5O43196 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
MSH5O43196 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
MSH5O43196 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
MSH5O43196 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
MSH5O43196 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC31.41■■■□□ 2.62
MSH5O43196 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
MSH5O43196 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC31.4■■■□□ 2.62
MSH5O43196 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC31.4■■■□□ 2.62
MSH5O43196 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
MSH5O43196 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
MSH5O43196 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
MSH5O43196 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC31.39■■■□□ 2.62
MSH5O43196 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
MSH5O43196 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
MSH5O43196 KRT16P3-201ENST00000439127 1283 ntBASIC31.39■■■□□ 2.62
MSH5O43196 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC31.39■■■□□ 2.62
MSH5O43196 AC087393.1-201ENST00000582896 145 ntBASIC31.39■■■□□ 2.62
MSH5O43196 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC31.39■■■□□ 2.62
MSH5O43196 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
MSH5O43196 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC31.38■■■□□ 2.61
MSH5O43196 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
MSH5O43196 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC31.38■■■□□ 2.61
MSH5O43196 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
MSH5O43196 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC31.38■■■□□ 2.61
MSH5O43196 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC31.38■■■□□ 2.61
MSH5O43196 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC31.38■■■□□ 2.61
MSH5O43196 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
MSH5O43196 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
MSH5O43196 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
MSH5O43196 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC31.37■■■□□ 2.61
MSH5O43196 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC31.37■■■□□ 2.61
MSH5O43196 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
MSH5O43196 BX664725.1-201ENST00000438252 379 ntBASIC31.37■■■□□ 2.61
MSH5O43196 UNC93B8-201ENST00000511903 705 ntBASIC31.37■■■□□ 2.61
MSH5O43196 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
MSH5O43196 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
MSH5O43196 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC31.37■■■□□ 2.61
MSH5O43196 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH5O43196 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH5O43196 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC31.36■■■□□ 2.61
MSH5O43196 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
MSH5O43196 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC31.36■■■□□ 2.61
MSH5O43196 RALB-208ENST00000631312 311 ntTSL 5 BASIC31.36■■■□□ 2.61
MSH5O43196 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
MSH5O43196 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC31.35■■■□□ 2.61
MSH5O43196 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.61
MSH5O43196 LONRF2P2-201ENST00000439212 571 ntBASIC31.35■■■□□ 2.61
MSH5O43196 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC31.35■■■□□ 2.61
MSH5O43196 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
MSH5O43196 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
MSH5O43196 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
MSH5O43196 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC31.34■■■□□ 2.61
MSH5O43196 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC31.34■■■□□ 2.61
MSH5O43196 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
MSH5O43196 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC31.33■■■□□ 2.61
MSH5O43196 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
MSH5O43196 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
MSH5O43196 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.61
MSH5O43196 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
MSH5O43196 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.32■■■□□ 2.6
MSH5O43196 NALT1-201ENST00000429224 738 ntTSL 5 BASIC31.32■■■□□ 2.6
MSH5O43196 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
MSH5O43196 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.32■■■□□ 2.6
MSH5O43196 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
MSH5O43196 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
MSH5O43196 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
MSH5O43196 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC31.31■■■□□ 2.6
MSH5O43196 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC31.31■■■□□ 2.6
MSH5O43196 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms