Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAV39A0A0B4J263 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV39A0A0B4J263 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
TRAV39A0A0B4J263 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV39A0A0B4J263 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV39A0A0B4J263 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRAV39A0A0B4J263 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV39A0A0B4J263 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAV39A0A0B4J263 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 LINC01124-201ENST00000409786 2117 ntBASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.68■□□□□ 0.74
TRAV39A0A0B4J263 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.67■□□□□ 0.74
TRAV39A0A0B4J263 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
TRAV39A0A0B4J263 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.65■□□□□ 0.74
TRAV39A0A0B4J263 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV39A0A0B4J263 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV39A0A0B4J263 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TRAV39A0A0B4J263 AP003733.4-201ENST00000623785 1697 ntBASIC19.65■□□□□ 0.74
TRAV39A0A0B4J263 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TRAV39A0A0B4J263 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
TRAV39A0A0B4J263 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 AL592293.1-201ENST00000502889 1188 ntBASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 HSD17B1P1-201ENST00000590052 955 ntBASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV39A0A0B4J263 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV39A0A0B4J263 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.6■□□□□ 0.73
TRAV39A0A0B4J263 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms