Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.68■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC31.68■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC31.68■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC31.68■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC31.67■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 SNAI3-AS1-204ENST00000567997 2048 ntBASIC31.67■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 SLC6A10P-202ENST00000431994 2058 ntBASIC31.67■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC31.66■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC31.66■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC31.66■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC31.66■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 AC008406.3-201ENST00000620001 1374 ntBASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC31.64■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
SENP3-EIF4A1A0A087X0R7 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.64■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC31.64■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC31.63■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 AC097639.1-201ENST00000565519 1891 ntBASIC31.63■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC31.63■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC31.63■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 DUX4L18-201ENST00000553347 1267 ntBASIC31.61■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC31.6■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.59■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC31.58■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 AL356441.2-201ENST00000443009 864 ntBASIC31.58■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SENP3-EIF4A1A0A087X0R7 DUX4L9-201ENST00000449051 1259 ntBASIC31.57■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.57■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC31.55■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 MIR638-201ENST00000385237 100 ntBASIC31.55■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.55■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC31.54■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC31.53■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SENP3-EIF4A1A0A087X0R7 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.52■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms