Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 KRT18P2-201ENST00000447938 1258 ntBASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
HIF3AQ9Y2N7 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 WASH6P-202ENST00000359512 1437 ntBASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 BEX3-201ENST00000361298 921 ntTSL 2 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 RPL13AP23-201ENST00000480739 586 ntBASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 RPL18-209ENST00000550645 463 ntTSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 RPL18-214ENST00000552588 559 ntTSL 3 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AC068137.2-201ENST00000605408 478 ntBASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AL161645.1-201ENST00000622716 1255 ntBASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 AC011270.2-201ENST00000624293 2550 ntBASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
HIF3AQ9Y2N7 IL9RP2-201ENST00000423948 1312 ntBASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.66□□□□□ -0.06
HIF3AQ9Y2N7 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms