Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
LIMCH1Q9UPQ0 AC013268.4-201ENST00000637413 2228 ntBASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 CASK-202ENST00000378158 3848 ntTSL 5 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 MDH2-205ENST00000461263 648 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 PDPK2P-202ENST00000562415 1191 ntBASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 SLC9A7P1-201ENST00000554295 3311 ntBASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIMCH1Q9UPQ0 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 IL9RP2-201ENST00000423948 1312 ntBASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 AC002056.1-201ENST00000395613 760 ntBASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 AL513190.1-201ENST00000621254 727 ntBASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
LIMCH1Q9UPQ0 AC144831.1-201ENST00000573312 2656 ntBASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 F11R-206ENST00000621309 4770 ntTSL 5 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC19.08■□□□□ 0.65
LIMCH1Q9UPQ0 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms