Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 MRPL3P1-201ENST00000400109 1033 ntBASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 AC134407.2-201ENST00000625089 1978 ntBASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIMA1Q9UHB6 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIMA1Q9UHB6 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
LIMA1Q9UHB6 PMS2P7-201ENST00000506558 1336 ntBASIC17.71■□□□□ 0.42
LIMA1Q9UHB6 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.71■□□□□ 0.42
LIMA1Q9UHB6 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 AC087481.3-201ENST00000602886 1894 ntBASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 AC090616.6-203ENST00000579186 1945 ntBASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIMA1Q9UHB6 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 AC079776.4-201ENST00000511039 504 ntBASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 PRYP6-201ENST00000514804 343 ntBASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 WASH6P-202ENST00000359512 1437 ntBASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 AC025580.3-201ENST00000617932 1424 ntBASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
LIMA1Q9UHB6 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms