Protein–RNA interactions for Protein: Q9HCM3

KIAA1549, UPF0606 protein KIAA1549, humanhuman

Predictions only

Length 1,950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KIAA1549Q9HCM3 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
KIAA1549Q9HCM3 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
KIAA1549Q9HCM3 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
KIAA1549Q9HCM3 AC112504.1-201ENST00000623415 1841 ntBASIC14.33□□□□□ -0.11
KIAA1549Q9HCM3 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.33□□□□□ -0.11
KIAA1549Q9HCM3 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 HAUS4P1-201ENST00000406739 1145 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AL596325.1-201ENST00000563991 1082 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 BNIP3P1-202ENST00000550043 1585 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC023310.3-201ENST00000557027 670 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC100756.1-201ENST00000562736 682 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC138749.3-201ENST00000567691 622 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC132938.2-201ENST00000579188 680 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC116165.1-201ENST00000611806 668 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 AL591163.1-201ENST00000641757 987 ntBASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
KIAA1549Q9HCM3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 BTBD7P1-201ENST00000447253 1453 ntBASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 HIST3H2BA-201ENST00000436555 524 ntBASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 AC026979.3-201ENST00000607315 403 ntBASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
KIAA1549Q9HCM3 LINC02199-201ENST00000506655 2702 ntBASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 AL691432.1-201ENST00000596308 1422 ntBASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
KIAA1549Q9HCM3 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms