Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 AC027796.2-201ENST00000575326 344 ntBASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTCHD1Q96NR3 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 MIR4453-201ENST00000584019 89 ntBASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 TUBB3P1-201ENST00000405796 1332 ntBASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PTCHD1Q96NR3 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 HLA-DRB6-201ENST00000411500 1235 ntBASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 AC067863.1-201ENST00000494933 530 ntBASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 RFPL4AP1-201ENST00000530883 850 ntBASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 REXO1L8P-201ENST00000604378 1897 ntBASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 AL139384.1-201ENST00000612143 3047 ntBASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PTCHD1Q96NR3 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms