Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 MIR4453-201ENST00000584019 89 ntBASIC15.83■□□□□ 0.12
VRK3Q8IV63 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.83■□□□□ 0.12
VRK3Q8IV63 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
VRK3Q8IV63 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 AC003101.2-201ENST00000612557 442 ntBASIC15.82■□□□□ 0.12
VRK3Q8IV63 MIR6080-201ENST00000617359 66 ntBASIC15.82■□□□□ 0.12
VRK3Q8IV63 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VRK3Q8IV63 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC15.82■□□□□ 0.12
VRK3Q8IV63 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VRK3Q8IV63 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.81■□□□□ 0.12
VRK3Q8IV63 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 AL512356.2-201ENST00000546955 174 ntBASIC15.81■□□□□ 0.12
VRK3Q8IV63 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.81■□□□□ 0.12
VRK3Q8IV63 AC093028.1-201ENST00000622998 982 ntBASIC15.81■□□□□ 0.12
VRK3Q8IV63 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms