Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC21.69■■□□□ 1.06
NPHP3Q7Z494 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 BX284668.4-201ENST00000453917 508 ntBASIC21.68■■□□□ 1.06
NPHP3Q7Z494 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 AP006547.1-201ENST00000563435 692 ntBASIC21.68■■□□□ 1.06
NPHP3Q7Z494 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
NPHP3Q7Z494 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 BNIP3P1-202ENST00000550043 1585 ntBASIC21.67■■□□□ 1.06
NPHP3Q7Z494 GUK1-206ENST00000366723 845 ntTSL 5 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 MIR6727-201ENST00000620702 65 ntBASIC21.67■■□□□ 1.06
NPHP3Q7Z494 AC138951.2-201ENST00000623455 1161 ntBASIC21.67■■□□□ 1.06
NPHP3Q7Z494 AC005332.8-201ENST00000622750 2735 ntBASIC21.67■■□□□ 1.06
NPHP3Q7Z494 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 BCL2-203ENST00000589955 5011 ntBASIC21.67■■□□□ 1.06
NPHP3Q7Z494 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP3Q7Z494 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 NOC2LP2-201ENST00000407594 1944 ntBASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AL133373.2-201ENST00000623187 2828 ntBASIC21.66■■□□□ 1.06
NPHP3Q7Z494 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 FAM197Y7-201ENST00000432892 766 ntBASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AC026410.3-201ENST00000514280 936 ntBASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AC078819.1-201ENST00000547454 765 ntBASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AC012085.1-201ENST00000548270 765 ntBASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 IFT20-206ENST00000578122 834 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 IFT20-208ENST00000578985 831 ntTSL 3 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC21.66■■□□□ 1.06
NPHP3Q7Z494 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.66■■□□□ 1.06
NPHP3Q7Z494 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms