Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CCDC88AQ3V6T2 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 RPS2P36-201ENST00000456516 831 ntBASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
CCDC88AQ3V6T2 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 FO393414.2-201ENST00000405153 598 ntBASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 AL008638.5-201ENST00000623814 1298 ntBASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 AC020916.1-201ENST00000587762 1774 ntBASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CCDC88AQ3V6T2 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 AC093433.1-201ENST00000458048 571 ntBASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 AC091804.1-201ENST00000486888 567 ntBASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 AC005252.2-201ENST00000624630 1141 ntBASIC19.52■□□□□ 0.71
CCDC88AQ3V6T2 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 POU5F1P6-201ENST00000466990 990 ntBASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 CHMP4BP1-201ENST00000556017 588 ntBASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 AC079328.1-201ENST00000560358 952 ntBASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC19.51■□□□□ 0.71
CCDC88AQ3V6T2 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
CCDC88AQ3V6T2 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms