Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 AD001527.2-201ENST00000622994 785 ntBASIC14.55□□□□□ -0.08
SCN1BQ07699 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.55□□□□□ -0.08
SCN1BQ07699 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SCN1BQ07699 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SCN1BQ07699 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SCN1BQ07699 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SCN1BQ07699 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SCN1BQ07699 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.55□□□□□ -0.08
SCN1BQ07699 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SCN1BQ07699 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.55□□□□□ -0.08
SCN1BQ07699 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
SCN1BQ07699 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
SCN1BQ07699 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
SCN1BQ07699 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SCN1BQ07699 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SCN1BQ07699 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SCN1BQ07699 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SCN1BQ07699 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
SCN1BQ07699 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SCN1BQ07699 AC139749.1-202ENST00000617529 3139 ntBASIC14.55□□□□□ -0.08
SCN1BQ07699 INTS4P1-201ENST00000438455 1935 ntBASIC14.54□□□□□ -0.08
SCN1BQ07699 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
SCN1BQ07699 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
SCN1BQ07699 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SCN1BQ07699 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SCN1BQ07699 CTNS-203ENST00000399306 803 ntTSL 3 BASIC14.54□□□□□ -0.08
SCN1BQ07699 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC14.54□□□□□ -0.08
SCN1BQ07699 IGHV3-47-201ENST00000425060 335 ntBASIC14.54□□□□□ -0.08
SCN1BQ07699 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
SCN1BQ07699 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 COX5A-202ENST00000562233 441 ntTSL 3 BASIC14.54□□□□□ -0.08
SCN1BQ07699 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 AC091076.1-201ENST00000610741 619 ntBASIC14.54□□□□□ -0.08
SCN1BQ07699 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.54□□□□□ -0.08
SCN1BQ07699 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SCN1BQ07699 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.54□□□□□ -0.08
SCN1BQ07699 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.54□□□□□ -0.08
SCN1BQ07699 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.54□□□□□ -0.08
SCN1BQ07699 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.54□□□□□ -0.08
SCN1BQ07699 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
SCN1BQ07699 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SCN1BQ07699 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.53□□□□□ -0.08
SCN1BQ07699 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SCN1BQ07699 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SCN1BQ07699 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 LINC01101-201ENST00000622953 1884 ntBASIC14.53□□□□□ -0.08
SCN1BQ07699 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 TMBIM7P-203ENST00000641617 1718 ntBASIC14.53□□□□□ -0.08
SCN1BQ07699 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SCN1BQ07699 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SCN1BQ07699 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SCN1BQ07699 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms