Protein–RNA interactions for Protein: P61247

RPS3A, 40S ribosomal protein S3a, humanhuman

Known RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3AP61247 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RPS3AP61247 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.3■□□□□ 0.04
RPS3AP61247 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPS3AP61247 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
RPS3AP61247 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPS3AP61247 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RPS3AP61247 HCG4B-203ENST00000450128 991 ntBASIC15.3■□□□□ 0.04
RPS3AP61247 HNRNPRP1-201ENST00000453465 1695 ntBASIC15.3■□□□□ 0.04
RPS3AP61247 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPS3AP61247 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
RPS3AP61247 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPS3AP61247 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.3■□□□□ 0.04
RPS3AP61247 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
RPS3AP61247 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.3■□□□□ 0.04
RPS3AP61247 AC007064.4-201ENST00000637740 555 ntBASIC15.3■□□□□ 0.04
RPS3AP61247 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
RPS3AP61247 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC15.29■□□□□ 0.04
RPS3AP61247 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
RPS3AP61247 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
RPS3AP61247 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 AC073347.1-201ENST00000421633 2643 ntBASIC15.29■□□□□ 0.04
RPS3AP61247 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
RPS3AP61247 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.29■□□□□ 0.04
RPS3AP61247 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.29■□□□□ 0.04
RPS3AP61247 CXCL1P1-201ENST00000502804 216 ntBASIC15.29■□□□□ 0.04
RPS3AP61247 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC15.29■□□□□ 0.04
RPS3AP61247 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.29■□□□□ 0.04
RPS3AP61247 AC096734.2-201ENST00000562054 433 ntBASIC15.29■□□□□ 0.04
RPS3AP61247 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RPS3AP61247 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
RPS3AP61247 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC15.29■□□□□ 0.04
RPS3AP61247 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.29■□□□□ 0.04
RPS3AP61247 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.29■□□□□ 0.04
RPS3AP61247 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
RPS3AP61247 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC15.28■□□□□ 0.04
RPS3AP61247 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.28■□□□□ 0.04
RPS3AP61247 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 AC013268.4-201ENST00000637413 2228 ntBASIC15.28■□□□□ 0.04
RPS3AP61247 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
RPS3AP61247 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
RPS3AP61247 AC002310.6-201ENST00000624451 1377 ntBASIC15.28■□□□□ 0.04
RPS3AP61247 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.28■□□□□ 0.04
RPS3AP61247 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.28■□□□□ 0.04
RPS3AP61247 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.28■□□□□ 0.04
RPS3AP61247 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.28■□□□□ 0.04
RPS3AP61247 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.28■□□□□ 0.04
RPS3AP61247 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.28■□□□□ 0.04
RPS3AP61247 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.28■□□□□ 0.04
RPS3AP61247 AC002347.1-201ENST00000569543 541 ntBASIC15.28■□□□□ 0.04
RPS3AP61247 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.28■□□□□ 0.04
RPS3AP61247 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
RPS3AP61247 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms