Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
RHBDL3P58872 AC112492.5-201ENST00000421897 457 ntBASIC18.98■□□□□ 0.63
RHBDL3P58872 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC18.98■□□□□ 0.63
RHBDL3P58872 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.98■□□□□ 0.63
RHBDL3P58872 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
RHBDL3P58872 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
RHBDL3P58872 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
RHBDL3P58872 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDL3P58872 PCDHA12-202ENST00000613593 2588 ntBASIC18.98■□□□□ 0.63
RHBDL3P58872 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDL3P58872 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.98■□□□□ 0.63
RHBDL3P58872 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDL3P58872 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDL3P58872 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
RHBDL3P58872 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDL3P58872 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
RHBDL3P58872 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.98■□□□□ 0.63
RHBDL3P58872 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
RHBDL3P58872 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
RHBDL3P58872 VILL-207ENST00000465644 1857 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDL3P58872 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.97■□□□□ 0.63
RHBDL3P58872 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
RHBDL3P58872 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.97■□□□□ 0.63
RHBDL3P58872 TTTY23B-201ENST00000442790 549 ntBASIC18.97■□□□□ 0.63
RHBDL3P58872 ACA64.2-201ENST00000459014 129 ntBASIC18.97■□□□□ 0.63
RHBDL3P58872 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC18.97■□□□□ 0.63
RHBDL3P58872 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 IGHV3-71-201ENST00000523324 359 ntBASIC18.97■□□□□ 0.63
RHBDL3P58872 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.97■□□□□ 0.63
RHBDL3P58872 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC18.97■□□□□ 0.63
RHBDL3P58872 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDL3P58872 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
RHBDL3P58872 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDL3P58872 AL033527.5-201ENST00000641382 801 ntBASIC18.97■□□□□ 0.63
RHBDL3P58872 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDL3P58872 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.97■□□□□ 0.63
RHBDL3P58872 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.97■□□□□ 0.63
RHBDL3P58872 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
RHBDL3P58872 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.97■□□□□ 0.63
RHBDL3P58872 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
RHBDL3P58872 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RHBDL3P58872 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.96■□□□□ 0.63
RHBDL3P58872 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC18.96■□□□□ 0.63
RHBDL3P58872 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.96■□□□□ 0.63
RHBDL3P58872 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.96■□□□□ 0.63
RHBDL3P58872 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.96■□□□□ 0.63
RHBDL3P58872 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC18.96■□□□□ 0.63
RHBDL3P58872 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.96■□□□□ 0.63
RHBDL3P58872 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
RHBDL3P58872 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.96■□□□□ 0.63
RHBDL3P58872 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
RHBDL3P58872 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
RHBDL3P58872 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDL3P58872 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDL3P58872 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.95■□□□□ 0.62
RHBDL3P58872 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDL3P58872 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.95■□□□□ 0.62
RHBDL3P58872 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDL3P58872 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDL3P58872 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDL3P58872 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
RHBDL3P58872 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.95■□□□□ 0.62
RHBDL3P58872 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.95■□□□□ 0.62
RHBDL3P58872 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.95■□□□□ 0.62
RHBDL3P58872 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.95■□□□□ 0.62
RHBDL3P58872 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.95■□□□□ 0.62
RHBDL3P58872 KRT17P8-201ENST00000540749 863 ntBASIC18.95■□□□□ 0.62
RHBDL3P58872 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.95■□□□□ 0.62
RHBDL3P58872 AL450472.2-201ENST00000603663 1156 ntBASIC18.95■□□□□ 0.62
RHBDL3P58872 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
RHBDL3P58872 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms