Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.33■□□□□ 0.04
SOX3P41225 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 AL592309.1-201ENST00000443127 649 ntBASIC15.33■□□□□ 0.04
SOX3P41225 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
SOX3P41225 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
SOX3P41225 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 SNX33P1-201ENST00000592116 1762 ntBASIC15.33■□□□□ 0.04
SOX3P41225 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.33■□□□□ 0.04
SOX3P41225 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.33■□□□□ 0.04
SOX3P41225 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SOX3P41225 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
SOX3P41225 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC15.33■□□□□ 0.04
SOX3P41225 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.33■□□□□ 0.04
SOX3P41225 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC15.33■□□□□ 0.04
SOX3P41225 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
SOX3P41225 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
SOX3P41225 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
SOX3P41225 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
SOX3P41225 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SOX3P41225 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SOX3P41225 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
SOX3P41225 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
SOX3P41225 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 CD99-202ENST00000381180 530 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.32■□□□□ 0.04
SOX3P41225 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.32■□□□□ 0.04
SOX3P41225 AC005237.2-201ENST00000434368 219 ntBASIC15.32■□□□□ 0.04
SOX3P41225 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.32■□□□□ 0.04
SOX3P41225 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.32■□□□□ 0.04
SOX3P41225 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC15.32■□□□□ 0.04
SOX3P41225 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 KRT8P39-201ENST00000396270 1433 ntBASIC15.32■□□□□ 0.04
SOX3P41225 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
SOX3P41225 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.32■□□□□ 0.04
SOX3P41225 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
SOX3P41225 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
SOX3P41225 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC15.32■□□□□ 0.04
SOX3P41225 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
SOX3P41225 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.31■□□□□ 0.04
SOX3P41225 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
SOX3P41225 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.31■□□□□ 0.04
SOX3P41225 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.31■□□□□ 0.04
SOX3P41225 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
SOX3P41225 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms