Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
MSX2P35548 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
MSX2P35548 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 AC087163.2-201ENST00000457299 853 ntBASIC15.55■□□□□ 0.08
MSX2P35548 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.55■□□□□ 0.08
MSX2P35548 TPSP2-201ENST00000561760 610 ntBASIC15.55■□□□□ 0.08
MSX2P35548 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.55■□□□□ 0.08
MSX2P35548 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.55■□□□□ 0.08
MSX2P35548 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
MSX2P35548 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 PGM5P2-202ENST00000637225 1043 ntBASIC15.55■□□□□ 0.08
MSX2P35548 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.55■□□□□ 0.08
MSX2P35548 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 CICP4-201ENST00000447359 2812 ntBASIC15.55■□□□□ 0.08
MSX2P35548 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
MSX2P35548 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
MSX2P35548 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.55■□□□□ 0.08
MSX2P35548 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSX2P35548 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 AC087481.3-201ENST00000602886 1894 ntBASIC15.54■□□□□ 0.08
MSX2P35548 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 AL359258.3-201ENST00000622910 2331 ntBASIC15.54■□□□□ 0.08
MSX2P35548 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 MED16-201ENST00000269814 1199 ntTSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.54■□□□□ 0.08
MSX2P35548 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 GZMM-202ENST00000592501 941 ntTSL 3 BASIC15.54■□□□□ 0.08
MSX2P35548 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
MSX2P35548 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
MSX2P35548 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSX2P35548 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.54■□□□□ 0.08
MSX2P35548 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.53■□□□□ 0.08
MSX2P35548 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
MSX2P35548 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSX2P35548 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
MSX2P35548 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.53■□□□□ 0.08
MSX2P35548 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
MSX2P35548 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
MSX2P35548 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms