Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.14□□□□□ -0.15
COL8A1P27658 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
COL8A1P27658 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
COL8A1P27658 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
COL8A1P27658 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.13□□□□□ -0.15
COL8A1P27658 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.13□□□□□ -0.15
COL8A1P27658 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC14.13□□□□□ -0.15
COL8A1P27658 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.13□□□□□ -0.15
COL8A1P27658 ACTG1P17-201ENST00000558391 1119 ntBASIC14.13□□□□□ -0.15
COL8A1P27658 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.13□□□□□ -0.15
COL8A1P27658 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.13□□□□□ -0.15
COL8A1P27658 MNT-208ENST00000575394 606 ntTSL 4 BASIC14.13□□□□□ -0.15
COL8A1P27658 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.13□□□□□ -0.15
COL8A1P27658 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.13□□□□□ -0.15
COL8A1P27658 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
COL8A1P27658 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.13□□□□□ -0.15
COL8A1P27658 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
COL8A1P27658 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
COL8A1P27658 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL8A1P27658 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL8A1P27658 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 CALR4P-201ENST00000431943 946 ntBASIC14.12□□□□□ -0.15
COL8A1P27658 YBX1P6-201ENST00000442962 1002 ntBASIC14.12□□□□□ -0.15
COL8A1P27658 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.12□□□□□ -0.15
COL8A1P27658 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.12□□□□□ -0.15
COL8A1P27658 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.12□□□□□ -0.15
COL8A1P27658 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL8A1P27658 KRT8P49-201ENST00000604166 1432 ntBASIC14.12□□□□□ -0.15
COL8A1P27658 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
COL8A1P27658 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
COL8A1P27658 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
COL8A1P27658 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms