Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.69■□□□□ 0.42
RFX1P22670 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC17.69■□□□□ 0.42
RFX1P22670 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
RFX1P22670 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX1P22670 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
RFX1P22670 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX1P22670 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX1P22670 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX1P22670 TSPY16P-201ENST00000449843 468 ntBASIC17.68■□□□□ 0.42
RFX1P22670 AL512638.1-201ENST00000457493 794 ntBASIC17.68■□□□□ 0.42
RFX1P22670 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX1P22670 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.68■□□□□ 0.42
RFX1P22670 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX1P22670 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.68■□□□□ 0.42
RFX1P22670 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.68■□□□□ 0.42
RFX1P22670 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.68■□□□□ 0.42
RFX1P22670 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX1P22670 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.68■□□□□ 0.42
RFX1P22670 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
RFX1P22670 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.68■□□□□ 0.42
RFX1P22670 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
RFX1P22670 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
RFX1P22670 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
RFX1P22670 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.67■□□□□ 0.42
RFX1P22670 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.67■□□□□ 0.42
RFX1P22670 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
RFX1P22670 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC17.67■□□□□ 0.42
RFX1P22670 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
RFX1P22670 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 AL671277.1-201ENST00000429656 993 ntBASIC17.67■□□□□ 0.42
RFX1P22670 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.67■□□□□ 0.42
RFX1P22670 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.67■□□□□ 0.42
RFX1P22670 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX1P22670 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
RFX1P22670 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX1P22670 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
RFX1P22670 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.66■□□□□ 0.42
RFX1P22670 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.66■□□□□ 0.42
RFX1P22670 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX1P22670 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX1P22670 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX1P22670 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX1P22670 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX1P22670 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms