Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 AL162727.3-201ENST00000635661 2787 ntBASIC13.78□□□□□ -0.2
USF1P22415 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 AGGF1P2-201ENST00000426656 2106 ntBASIC13.78□□□□□ -0.2
USF1P22415 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC13.78□□□□□ -0.2
USF1P22415 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC13.78□□□□□ -0.2
USF1P22415 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.78□□□□□ -0.2
USF1P22415 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.78□□□□□ -0.2
USF1P22415 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 AP005018.1-201ENST00000525475 301 ntBASIC13.78□□□□□ -0.2
USF1P22415 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC13.78□□□□□ -0.2
USF1P22415 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.78□□□□□ -0.2
USF1P22415 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.78□□□□□ -0.2
USF1P22415 AL662799.1-202ENST00000614205 422 ntBASIC13.78□□□□□ -0.2
USF1P22415 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 TUBB8P12-201ENST00000308911 1335 ntBASIC13.78□□□□□ -0.2
USF1P22415 TUBB7P-202ENST00000428444 1305 ntBASIC13.78□□□□□ -0.2
USF1P22415 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 TUBB8P7-204ENST00000567960 1332 ntBASIC13.78□□□□□ -0.2
USF1P22415 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
USF1P22415 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC13.78□□□□□ -0.2
USF1P22415 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.78□□□□□ -0.2
USF1P22415 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 AC092068.3-201ENST00000587894 2016 ntBASIC13.78□□□□□ -0.2
USF1P22415 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.78□□□□□ -0.2
USF1P22415 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.78□□□□□ -0.2
USF1P22415 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
USF1P22415 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.78□□□□□ -0.2
USF1P22415 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.78□□□□□ -0.2
USF1P22415 AL391005.1-201ENST00000623953 2435 ntBASIC13.78□□□□□ -0.2
USF1P22415 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
USF1P22415 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC13.77□□□□□ -0.2
USF1P22415 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
USF1P22415 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.77□□□□□ -0.21
USF1P22415 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
USF1P22415 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
USF1P22415 MRPS18AP1-201ENST00000414458 589 ntBASIC13.77□□□□□ -0.21
USF1P22415 TSSK5P-201ENST00000423978 907 ntBASIC13.77□□□□□ -0.21
USF1P22415 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
USF1P22415 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 SATB1-217ENST00000493952 626 ntTSL 3 BASIC13.77□□□□□ -0.21
USF1P22415 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.77□□□□□ -0.21
USF1P22415 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 CR383656.12-201ENST00000549567 513 ntBASIC13.77□□□□□ -0.21
USF1P22415 MPI-209ENST00000564003 1195 ntTSL 2 BASIC13.77□□□□□ -0.21
USF1P22415 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.21
USF1P22415 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.77□□□□□ -0.21
USF1P22415 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
USF1P22415 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 AC068418.2-201ENST00000577309 3703 ntBASIC13.77□□□□□ -0.21
USF1P22415 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
USF1P22415 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
USF1P22415 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms