Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
MSH3P20585 AC023141.5-201ENST00000458585 616 ntBASIC16.19■□□□□ 0.18
MSH3P20585 AC098859.1-201ENST00000502915 1238 ntBASIC16.19■□□□□ 0.18
MSH3P20585 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 AP001160.2-201ENST00000596071 487 ntBASIC16.19■□□□□ 0.18
MSH3P20585 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 LINC02199-201ENST00000506655 2702 ntBASIC16.19■□□□□ 0.18
MSH3P20585 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
MSH3P20585 AC092364.2-201ENST00000596710 2692 ntBASIC16.19■□□□□ 0.18
MSH3P20585 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 AL589702.1-201ENST00000641229 1509 ntBASIC16.19■□□□□ 0.18
MSH3P20585 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.19■□□□□ 0.18
MSH3P20585 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
MSH3P20585 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 REXO1L8P-201ENST00000604378 1897 ntBASIC16.18■□□□□ 0.18
MSH3P20585 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 AC008741.2-201ENST00000612792 3115 ntBASIC16.18■□□□□ 0.18
MSH3P20585 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.18■□□□□ 0.18
MSH3P20585 AC142381.1-201ENST00000426099 345 ntBASIC16.18■□□□□ 0.18
MSH3P20585 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.18■□□□□ 0.18
MSH3P20585 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.18■□□□□ 0.18
MSH3P20585 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
MSH3P20585 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.18■□□□□ 0.18
MSH3P20585 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.18■□□□□ 0.18
MSH3P20585 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.18■□□□□ 0.18
MSH3P20585 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
MSH3P20585 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.17■□□□□ 0.18
MSH3P20585 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
MSH3P20585 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.17■□□□□ 0.18
MSH3P20585 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.17■□□□□ 0.18
MSH3P20585 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
MSH3P20585 AC093520.2-201ENST00000561830 333 ntBASIC16.17■□□□□ 0.18
MSH3P20585 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.17■□□□□ 0.18
MSH3P20585 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms