Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.23■□□□□ 0.19
XRCC1P18887 AL627223.1-201ENST00000416693 442 ntBASIC16.23■□□□□ 0.19
XRCC1P18887 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.23■□□□□ 0.19
XRCC1P18887 TSEN15P1-201ENST00000423257 515 ntBASIC16.23■□□□□ 0.19
XRCC1P18887 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
XRCC1P18887 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.23■□□□□ 0.19
XRCC1P18887 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.23■□□□□ 0.19
XRCC1P18887 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 KRT8P23-201ENST00000560090 1207 ntBASIC16.23■□□□□ 0.19
XRCC1P18887 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.23■□□□□ 0.19
XRCC1P18887 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.23■□□□□ 0.19
XRCC1P18887 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.23■□□□□ 0.19
XRCC1P18887 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
XRCC1P18887 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
XRCC1P18887 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.22■□□□□ 0.19
XRCC1P18887 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.22■□□□□ 0.19
XRCC1P18887 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.22■□□□□ 0.19
XRCC1P18887 AC005237.2-201ENST00000434368 219 ntBASIC16.22■□□□□ 0.19
XRCC1P18887 SPCS2P4-201ENST00000436160 681 ntBASIC16.22■□□□□ 0.19
XRCC1P18887 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.22■□□□□ 0.19
XRCC1P18887 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 AC093520.2-201ENST00000561830 333 ntBASIC16.22■□□□□ 0.19
XRCC1P18887 LINC01225-203ENST00000563550 1244 ntBASIC16.22■□□□□ 0.19
XRCC1P18887 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.22■□□□□ 0.19
XRCC1P18887 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.22■□□□□ 0.19
XRCC1P18887 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
XRCC1P18887 AC009093.7-201ENST00000623853 1223 ntBASIC16.22■□□□□ 0.19
XRCC1P18887 AL139011.1-202ENST00000642063 584 ntBASIC16.22■□□□□ 0.19
XRCC1P18887 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
XRCC1P18887 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
XRCC1P18887 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.21■□□□□ 0.19
XRCC1P18887 AL139400.1-201ENST00000366220 510 ntBASIC16.21■□□□□ 0.19
XRCC1P18887 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
XRCC1P18887 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.21■□□□□ 0.19
XRCC1P18887 CBR1-202ENST00000399191 838 ntTSL 3 BASIC16.21■□□□□ 0.19
XRCC1P18887 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.21■□□□□ 0.19
XRCC1P18887 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.21■□□□□ 0.19
XRCC1P18887 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.19
XRCC1P18887 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.21■□□□□ 0.19
XRCC1P18887 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.21■□□□□ 0.19
XRCC1P18887 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
XRCC1P18887 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms