Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC011558.1-201ENST00000623459 338 ntBASIC16.39■□□□□ 0.21
VIMP08670 AL590326.2-201ENST00000625139 305 ntBASIC16.39■□□□□ 0.21
VIMP08670 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.39■□□□□ 0.21
VIMP08670 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
VIMP08670 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VIMP08670 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VIMP08670 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.39■□□□□ 0.21
VIMP08670 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.39■□□□□ 0.21
VIMP08670 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VIMP08670 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.38■□□□□ 0.21
VIMP08670 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
VIMP08670 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VIMP08670 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
VIMP08670 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 AL020989.1-201ENST00000422979 469 ntBASIC16.38■□□□□ 0.21
VIMP08670 AL845331.1-201ENST00000424978 1190 ntBASIC16.38■□□□□ 0.21
VIMP08670 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.38■□□□□ 0.21
VIMP08670 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 AC004817.3-201ENST00000602957 2129 ntBASIC16.38■□□□□ 0.21
VIMP08670 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.38■□□□□ 0.21
VIMP08670 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC16.38■□□□□ 0.21
VIMP08670 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VIMP08670 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.38■□□□□ 0.21
VIMP08670 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VIMP08670 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.38■□□□□ 0.21
VIMP08670 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VIMP08670 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VIMP08670 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 CICP23-201ENST00000605013 2741 ntBASIC16.37■□□□□ 0.21
VIMP08670 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.37■□□□□ 0.21
VIMP08670 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.37■□□□□ 0.21
VIMP08670 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.37■□□□□ 0.21
VIMP08670 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VIMP08670 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.37■□□□□ 0.21
VIMP08670 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VIMP08670 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
VIMP08670 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC16.37■□□□□ 0.21
VIMP08670 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VIMP08670 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
VIMP08670 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.36■□□□□ 0.21
VIMP08670 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VIMP08670 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms