Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.6■□□□□ 0.09
SEMA3DO95025 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 NEK7-201ENST00000367383 586 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.6■□□□□ 0.09
SEMA3DO95025 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 MCCD1P2-201ENST00000423228 335 ntBASIC15.6■□□□□ 0.09
SEMA3DO95025 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.6■□□□□ 0.09
SEMA3DO95025 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 AC091812.2-201ENST00000619081 385 ntBASIC15.6■□□□□ 0.09
SEMA3DO95025 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.6■□□□□ 0.09
SEMA3DO95025 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
SEMA3DO95025 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 PMS2P7-201ENST00000506558 1336 ntBASIC15.6■□□□□ 0.09
SEMA3DO95025 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
SEMA3DO95025 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.6■□□□□ 0.09
SEMA3DO95025 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.6■□□□□ 0.09
SEMA3DO95025 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 FLJ16779-201ENST00000612722 7638 ntBASIC15.6■□□□□ 0.09
SEMA3DO95025 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
SEMA3DO95025 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SEMA3DO95025 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SEMA3DO95025 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC15.59■□□□□ 0.09
SEMA3DO95025 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
SEMA3DO95025 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.59■□□□□ 0.09
SEMA3DO95025 MIR574-201ENST00000385209 96 ntBASIC15.59■□□□□ 0.09
SEMA3DO95025 AL355306.1-201ENST00000415580 579 ntBASIC15.59■□□□□ 0.09
SEMA3DO95025 AC004832.2-201ENST00000426397 482 ntBASIC15.59■□□□□ 0.09
SEMA3DO95025 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.59■□□□□ 0.09
SEMA3DO95025 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.59■□□□□ 0.09
SEMA3DO95025 PGAM5P1-201ENST00000518923 814 ntBASIC15.59■□□□□ 0.09
SEMA3DO95025 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.59■□□□□ 0.09
SEMA3DO95025 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 AC073389.1-201ENST00000595595 795 ntBASIC15.59■□□□□ 0.09
SEMA3DO95025 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.59■□□□□ 0.09
SEMA3DO95025 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 AL603832.2-201ENST00000566195 2125 ntBASIC15.59■□□□□ 0.09
SEMA3DO95025 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SEMA3DO95025 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.59■□□□□ 0.09
SEMA3DO95025 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SEMA3DO95025 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.58■□□□□ 0.09
SEMA3DO95025 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SEMA3DO95025 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SEMA3DO95025 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SEMA3DO95025 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SEMA3DO95025 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SEMA3DO95025 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SEMA3DO95025 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.58■□□□□ 0.08
SEMA3DO95025 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SEMA3DO95025 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SEMA3DO95025 AC023274.1-201ENST00000418278 595 ntBASIC15.58■□□□□ 0.08
SEMA3DO95025 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms