Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.61■□□□□ 0.41
RNF40O75150 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF40O75150 TSEN15P1-201ENST00000423257 515 ntBASIC17.61■□□□□ 0.41
RNF40O75150 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF40O75150 AP000344.2-201ENST00000512987 629 ntBASIC17.61■□□□□ 0.41
RNF40O75150 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF40O75150 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
RNF40O75150 AC093028.1-201ENST00000622998 982 ntBASIC17.61■□□□□ 0.41
RNF40O75150 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
RNF40O75150 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF40O75150 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
RNF40O75150 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF40O75150 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF40O75150 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF40O75150 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF40O75150 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RNF40O75150 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF40O75150 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 MYCLP1-201ENST00000372451 1075 ntBASIC17.6■□□□□ 0.41
RNF40O75150 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.6■□□□□ 0.41
RNF40O75150 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.6■□□□□ 0.41
RNF40O75150 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.6■□□□□ 0.41
RNF40O75150 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
RNF40O75150 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.6■□□□□ 0.41
RNF40O75150 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.6■□□□□ 0.41
RNF40O75150 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
RNF40O75150 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RNF40O75150 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.6■□□□□ 0.41
RNF40O75150 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.6■□□□□ 0.41
RNF40O75150 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RNF40O75150 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
RNF40O75150 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 MIR770-201ENST00000390219 98 ntBASIC17.59■□□□□ 0.41
RNF40O75150 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.59■□□□□ 0.41
RNF40O75150 CXCL1P1-201ENST00000502804 216 ntBASIC17.59■□□□□ 0.41
RNF40O75150 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RNF40O75150 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RNF40O75150 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.59■□□□□ 0.41
RNF40O75150 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms