Protein–RNA interactions for Protein: O60264

SMARCA5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, humanhuman

Predicted RBP Predictions only

Length 1,052 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA5O60264 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMARCA5O60264 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCA5O60264 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.79
SMARCA5O60264 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
SMARCA5O60264 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCA5O60264 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMARCA5O60264 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC20.01■□□□□ 0.79
SMARCA5O60264 AC134407.2-201ENST00000625089 1978 ntBASIC20.01■□□□□ 0.79
SMARCA5O60264 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC20.01■□□□□ 0.79
SMARCA5O60264 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SMARCA5O60264 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCA5O60264 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
SMARCA5O60264 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
SMARCA5O60264 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
SMARCA5O60264 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.01■□□□□ 0.79
SMARCA5O60264 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.01■□□□□ 0.79
SMARCA5O60264 KRT18P32-201ENST00000424695 1287 ntBASIC20.01■□□□□ 0.79
SMARCA5O60264 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.01■□□□□ 0.79
SMARCA5O60264 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC20.01■□□□□ 0.79
SMARCA5O60264 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC20.01■□□□□ 0.79
SMARCA5O60264 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
SMARCA5O60264 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC20.01■□□□□ 0.79
SMARCA5O60264 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.01■□□□□ 0.79
SMARCA5O60264 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.01■□□□□ 0.79
SMARCA5O60264 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
SMARCA5O60264 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMARCA5O60264 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC20■□□□□ 0.79
SMARCA5O60264 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20■□□□□ 0.79
SMARCA5O60264 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC20■□□□□ 0.79
SMARCA5O60264 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 DNAJB3-202ENST00000449667 1266 ntBASIC20■□□□□ 0.79
SMARCA5O60264 AP000344.2-201ENST00000512987 629 ntBASIC20■□□□□ 0.79
SMARCA5O60264 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
SMARCA5O60264 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC20■□□□□ 0.79
SMARCA5O60264 AL365330.1-201ENST00000607459 531 ntBASIC20■□□□□ 0.79
SMARCA5O60264 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20■□□□□ 0.79
SMARCA5O60264 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMARCA5O60264 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC20■□□□□ 0.79
SMARCA5O60264 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC20■□□□□ 0.79
SMARCA5O60264 AC022188.1-201ENST00000620960 1664 ntBASIC20■□□□□ 0.79
SMARCA5O60264 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
SMARCA5O60264 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA5O60264 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
SMARCA5O60264 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
SMARCA5O60264 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA5O60264 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.99■□□□□ 0.79
SMARCA5O60264 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA5O60264 FAM220BP-201ENST00000377689 816 ntBASIC19.99■□□□□ 0.79
SMARCA5O60264 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 HAUS4P1-201ENST00000406739 1145 ntBASIC19.99■□□□□ 0.79
SMARCA5O60264 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA5O60264 CNN2P11-201ENST00000429351 262 ntBASIC19.99■□□□□ 0.79
SMARCA5O60264 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCA5O60264 AC004967.1-201ENST00000453589 447 ntBASIC19.99■□□□□ 0.79
SMARCA5O60264 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA5O60264 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC19.99■□□□□ 0.79
SMARCA5O60264 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCA5O60264 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC19.99■□□□□ 0.79
SMARCA5O60264 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.99■□□□□ 0.79
SMARCA5O60264 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMARCA5O60264 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms