Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 AC125807.1-201ENST00000483097 614 ntBASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 DUX4L27-201ENST00000554796 1261 ntBASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 RARRES2P9-201ENST00000565168 469 ntBASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 AL596087.1-201ENST00000400979 1969 ntBASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
COL4A3BPQ9Y5P4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SPTSSB-204ENST00000617024 1292 ntBASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
COL4A3BPQ9Y5P4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 HLA-H-201ENST00000383620 1096 ntBASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 AC107890.1-201ENST00000422478 521 ntBASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 AC005498.2-205ENST00000593218 784 ntBASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
COL4A3BPQ9Y5P4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
COL4A3BPQ9Y5P4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL4A3BPQ9Y5P4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL4A3BPQ9Y5P4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
COL4A3BPQ9Y5P4 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A3BPQ9Y5P4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A3BPQ9Y5P4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL4A3BPQ9Y5P4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
COL4A3BPQ9Y5P4 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms