Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
CUEDC1Q9NWM3 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AC006449.6-201ENST00000612330 2296 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 MIR346-201ENST00000362234 95 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AL627223.1-201ENST00000416693 442 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 FAM58DP-201ENST00000428076 619 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 MIR4745-201ENST00000577608 62 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AC004835.2-201ENST00000603762 682 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AC093512.1-201ENST00000617969 520 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 U82695.1-201ENST00000635752 1889 ntBASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CUEDC1Q9NWM3 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 AL592424.1-201ENST00000563624 1536 ntBASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 AL589702.1-201ENST00000641229 1509 ntBASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 KRT8P23-201ENST00000560090 1207 ntBASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 AL589935.2-201ENST00000616471 1231 ntBASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
CUEDC1Q9NWM3 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms