Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
MMP28Q9H239 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14.43□□□□□ -0.1
MMP28Q9H239 DANCR-204ENST00000444958 709 ntTSL 3 BASIC14.43□□□□□ -0.1
MMP28Q9H239 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.43□□□□□ -0.1
MMP28Q9H239 AC009533.2-201ENST00000543664 586 ntBASIC14.43□□□□□ -0.1
MMP28Q9H239 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.43□□□□□ -0.1
MMP28Q9H239 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.43□□□□□ -0.1
MMP28Q9H239 MIR3180-1-201ENST00000580374 94 ntBASIC14.43□□□□□ -0.1
MMP28Q9H239 MIR3180-3-201ENST00000584616 94 ntBASIC14.43□□□□□ -0.1
MMP28Q9H239 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
MMP28Q9H239 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
MMP28Q9H239 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.43□□□□□ -0.1
MMP28Q9H239 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.43□□□□□ -0.1
MMP28Q9H239 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 AC010460.3-201ENST00000511359 1579 ntBASIC14.43□□□□□ -0.1
MMP28Q9H239 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
MMP28Q9H239 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC14.43□□□□□ -0.1
MMP28Q9H239 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 COX5BP2-201ENST00000392354 334 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 AC007967.3-201ENST00000434308 558 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 SRP19-202ENST00000445150 833 ntTSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 KRT17P6-201ENST00000453795 1220 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 MINOS1P3-201ENST00000457048 203 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 AC091607.1-201ENST00000490318 1060 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 AC104819.1-201ENST00000504587 486 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 AP000867.3-201ENST00000524675 377 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.42□□□□□ -0.1
MMP28Q9H239 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 AP005901.3-202ENST00000581653 237 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
MMP28Q9H239 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 GPR89P-201ENST00000407924 1495 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.42□□□□□ -0.1
MMP28Q9H239 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 CICP23-201ENST00000605013 2741 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 AP003680.1-201ENST00000598970 3660 ntBASIC14.42□□□□□ -0.1
MMP28Q9H239 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC14.42□□□□□ -0.1
MMP28Q9H239 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
MMP28Q9H239 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC14.41□□□□□ -0.1
MMP28Q9H239 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.41□□□□□ -0.1
MMP28Q9H239 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
MMP28Q9H239 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
MMP28Q9H239 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
MMP28Q9H239 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms