Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 BTBD6P1-201ENST00000412176 1267 ntBASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 FNTAP2-201ENST00000430308 634 ntBASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 SLED1-202ENST00000512051 380 ntBASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC19.17■□□□□ 0.66
ZNF541Q9H0D2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 LETM1P2-201ENST00000597330 2178 ntBASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 AC006001.1-201ENST00000325130 474 ntBASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 HINT2P1-201ENST00000419438 481 ntBASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 AC091804.1-201ENST00000486888 567 ntBASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 U62317.3-201ENST00000608319 855 ntBASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 AC138951.2-201ENST00000623455 1161 ntBASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.16■□□□□ 0.66
ZNF541Q9H0D2 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AC091046.1-201ENST00000331871 207 ntBASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 MPRIPP1-201ENST00000452433 1089 ntBASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 BX284668.4-201ENST00000453917 508 ntBASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 UPF3AP2-201ENST00000457924 1132 ntBASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AC243562.2-201ENST00000561247 970 ntBASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 MIR4706-201ENST00000582134 82 ntBASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ZNF541Q9H0D2 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms