Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ACTL9-202ENST00000612068 1252 ntBASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 AC138969.2-201ENST00000532739 9932 ntBASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 OR7E47P-204ENST00000575924 449 ntBASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 AC004790.2-201ENST00000623588 572 ntBASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
CCDC54Q8NEL0 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 SBF1P1-201ENST00000444527 5631 ntBASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 AC245100.5-201ENST00000452108 331 ntBASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 CD63-210ENST00000550776 870 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 AC024909.3-201ENST00000611513 2257 ntBASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CCDC54Q8NEL0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CCDC54Q8NEL0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms