Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
DEPDC4Q8N2C3 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 RN7SL602P-201ENST00000578326 324 ntBASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 AP002414.2-201ENST00000591780 3365 ntBASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
DEPDC4Q8N2C3 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 CICP4-201ENST00000447359 2812 ntBASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 AC021087.4-201ENST00000563761 564 ntBASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 AC139887.3-201ENST00000568585 713 ntBASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 NKAPP1-205ENST00000585790 367 ntBASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 MTDHP4-201ENST00000600287 670 ntBASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 AC023511.2-201ENST00000618803 211 ntBASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 AL022326.1-202ENST00000641533 845 ntBASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
DEPDC4Q8N2C3 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
DEPDC4Q8N2C3 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms