Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 AKAP8P1-201ENST00000434743 1349 ntBASIC14.43□□□□□ -0.1
SKA3Q8IX90 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 RPSAP43-201ENST00000402237 625 ntBASIC14.43□□□□□ -0.1
SKA3Q8IX90 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 UPF3AP3-201ENST00000420996 769 ntBASIC14.43□□□□□ -0.1
SKA3Q8IX90 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 GPX1P2-201ENST00000429271 606 ntBASIC14.43□□□□□ -0.1
SKA3Q8IX90 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 FAM86C2P-203ENST00000528684 1004 ntBASIC14.43□□□□□ -0.1
SKA3Q8IX90 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 ELL2P1-201ENST00000413990 1906 ntBASIC14.43□□□□□ -0.1
SKA3Q8IX90 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
SKA3Q8IX90 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.43□□□□□ -0.1
SKA3Q8IX90 NARF-206ENST00000457415 1668 ntTSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 ADH5P3-201ENST00000433842 1137 ntBASIC14.42□□□□□ -0.1
SKA3Q8IX90 CEND1P1-201ENST00000451006 455 ntBASIC14.42□□□□□ -0.1
SKA3Q8IX90 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 AL135744.1-201ENST00000565098 629 ntBASIC14.42□□□□□ -0.1
SKA3Q8IX90 AL138918.1-201ENST00000568306 659 ntBASIC14.42□□□□□ -0.1
SKA3Q8IX90 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 AC026120.1-201ENST00000611536 926 ntBASIC14.42□□□□□ -0.1
SKA3Q8IX90 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.42□□□□□ -0.1
SKA3Q8IX90 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SKA3Q8IX90 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.42□□□□□ -0.1
SKA3Q8IX90 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms