Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC60Q8IWA6 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 CALY-202ENST00000368555 783 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 RAD18-204ENST00000418463 563 ntTSL 4 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 RAD18-205ENST00000421052 582 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 AC114501.2-201ENST00000439631 535 ntBASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 PTK7-212ENST00000476760 902 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 AC004233.3-201ENST00000607794 1269 ntBASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC60Q8IWA6 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 AC004987.2-201ENST00000395959 1148 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 PIN1P1-201ENST00000412108 996 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 GNAQP1-201ENST00000444815 1067 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 EEF1DP4-201ENST00000446006 880 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 AC243562.2-201ENST00000561247 970 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 AF228730.6-201ENST00000641497 218 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 AC084121.3-201ENST00000641716 218 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 AC105233.6-201ENST00000642093 218 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 BNIP3P1-202ENST00000550043 1585 ntBASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC60Q8IWA6 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC60Q8IWA6 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms