Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SH3RF1Q7Z6J0 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AC138969.3-201ENST00000546612 1459 ntBASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AC138932.2-201ENST00000548268 1459 ntBASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AC126755.4-201ENST00000549796 1459 ntBASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 API5-211ENST00000534695 560 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AC009407.1-201ENST00000568958 598 ntBASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AL031055.1-201ENST00000606362 631 ntBASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AC008738.7-201ENST00000609744 511 ntBASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SH3RF1Q7Z6J0 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 AC007541.1-201ENST00000570282 1469 ntBASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 AC009477.1-201ENST00000452936 217 ntBASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 RARRES2P9-201ENST00000565168 469 ntBASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 AL132655.2-201ENST00000596276 594 ntBASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 IGHV3-72-202ENST00000621503 303 ntBASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SH3RF1Q7Z6J0 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 AP3S2-216ENST00000617003 1561 ntBASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SH3RF1Q7Z6J0 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms