Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 LINC00265-3P-201ENST00000447588 903 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AC104819.1-201ENST00000504587 486 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AC074051.2-201ENST00000565115 352 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AP005117.1-201ENST00000584346 1413 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AL139424.1-201ENST00000607572 797 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AC020765.3-201ENST00000613051 740 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AL589182.2-201ENST00000619332 1049 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 REXO1L3P-201ENST00000622202 1288 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AL022326.1-202ENST00000641533 845 ntBASIC14.62□□□□□ -0.07
CCDC58Q4VC31 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC58Q4VC31 AC005840.4-201ENST00000541242 2494 ntBASIC14.61□□□□□ -0.07
CCDC58Q4VC31 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 RCN1P1-201ENST00000400413 996 ntBASIC14.61□□□□□ -0.07
CCDC58Q4VC31 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 AP002383.4-201ENST00000442518 975 ntBASIC14.61□□□□□ -0.07
CCDC58Q4VC31 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 AC116407.4-201ENST00000623319 1061 ntBASIC14.61□□□□□ -0.07
CCDC58Q4VC31 CCNC-219ENST00000627680 896 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC58Q4VC31 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC58Q4VC31 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms