Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 CHCHD2P3-201ENST00000603038 451 ntBASIC17.22■□□□□ 0.35
USP41Q3LFD5 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
USP41Q3LFD5 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP41Q3LFD5 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 FO393414.2-201ENST00000405153 598 ntBASIC17.21■□□□□ 0.35
USP41Q3LFD5 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 AC055876.2-201ENST00000531834 546 ntBASIC17.21■□□□□ 0.35
USP41Q3LFD5 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 TPRX2P-201ENST00000535362 881 ntBASIC17.21■□□□□ 0.35
USP41Q3LFD5 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP41Q3LFD5 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.21■□□□□ 0.35
USP41Q3LFD5 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
USP41Q3LFD5 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
USP41Q3LFD5 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
USP41Q3LFD5 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 ARL16-202ENST00000570561 768 ntTSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 AC008494.3-201ENST00000606615 944 ntBASIC17.2■□□□□ 0.34
USP41Q3LFD5 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
USP41Q3LFD5 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP41Q3LFD5 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms