Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.3■□□□□ 0.52
TPM4P67936 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC18.29■□□□□ 0.52
TPM4P67936 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TPM4P67936 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC18.29■□□□□ 0.52
TPM4P67936 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
TPM4P67936 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.29■□□□□ 0.52
TPM4P67936 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TPM4P67936 PTCHD3P3-201ENST00000403073 906 ntBASIC18.29■□□□□ 0.52
TPM4P67936 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM4P67936 RBM17P3-201ENST00000417687 1192 ntBASIC18.29■□□□□ 0.52
TPM4P67936 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.29■□□□□ 0.52
TPM4P67936 PCED1CP-201ENST00000419887 785 ntBASIC18.29■□□□□ 0.52
TPM4P67936 AC106795.1-205ENST00000512851 1056 ntBASIC18.29■□□□□ 0.52
TPM4P67936 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.29■□□□□ 0.52
TPM4P67936 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM4P67936 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM4P67936 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.29■□□□□ 0.52
TPM4P67936 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.29■□□□□ 0.52
TPM4P67936 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TPM4P67936 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.29■□□□□ 0.52
TPM4P67936 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TPM4P67936 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
TPM4P67936 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TPM4P67936 AC005622.1-201ENST00000636801 1703 ntBASIC18.29■□□□□ 0.52
TPM4P67936 AC013268.4-201ENST00000637413 2228 ntBASIC18.29■□□□□ 0.52
TPM4P67936 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
TPM4P67936 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.28■□□□□ 0.52
TPM4P67936 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.28■□□□□ 0.52
TPM4P67936 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
TPM4P67936 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC18.28■□□□□ 0.52
TPM4P67936 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC18.28■□□□□ 0.52
TPM4P67936 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC18.28■□□□□ 0.52
TPM4P67936 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.28■□□□□ 0.52
TPM4P67936 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TPM4P67936 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TPM4P67936 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18.27■□□□□ 0.52
TPM4P67936 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
TPM4P67936 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.27■□□□□ 0.52
TPM4P67936 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
TPM4P67936 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 U82695.1-201ENST00000635752 1889 ntBASIC18.27■□□□□ 0.52
TPM4P67936 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
TPM4P67936 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
TPM4P67936 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.27■□□□□ 0.52
TPM4P67936 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.27■□□□□ 0.52
TPM4P67936 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.27■□□□□ 0.52
TPM4P67936 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.27■□□□□ 0.52
TPM4P67936 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.27■□□□□ 0.52
TPM4P67936 SLC25A6P2-201ENST00000497974 877 ntBASIC18.27■□□□□ 0.52
TPM4P67936 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.27■□□□□ 0.52
TPM4P67936 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.27■□□□□ 0.52
TPM4P67936 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.27■□□□□ 0.52
TPM4P67936 AC004706.3-202ENST00000621574 984 ntBASIC18.27■□□□□ 0.52
TPM4P67936 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TPM4P67936 AC016027.1-202ENST00000607927 1699 ntBASIC18.27■□□□□ 0.52
TPM4P67936 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
TPM4P67936 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
TPM4P67936 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.27■□□□□ 0.51
TPM4P67936 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms