Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC21.2■□□□□ 0.98
RIPK4P57078 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.2■□□□□ 0.98
RIPK4P57078 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.2■□□□□ 0.98
RIPK4P57078 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RIPK4P57078 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RIPK4P57078 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RIPK4P57078 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RIPK4P57078 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RIPK4P57078 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RIPK4P57078 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC21.2■□□□□ 0.98
RIPK4P57078 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
RIPK4P57078 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC21.2■□□□□ 0.98
RIPK4P57078 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC21.2■□□□□ 0.98
RIPK4P57078 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.2■□□□□ 0.98
RIPK4P57078 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
RIPK4P57078 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
RIPK4P57078 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC21.19■□□□□ 0.98
RIPK4P57078 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 SPDYE17-201ENST00000412399 783 ntBASIC21.19■□□□□ 0.98
RIPK4P57078 TSSK5P-201ENST00000423978 907 ntBASIC21.19■□□□□ 0.98
RIPK4P57078 BASP1P1-201ENST00000430708 665 ntBASIC21.19■□□□□ 0.98
RIPK4P57078 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.19■□□□□ 0.98
RIPK4P57078 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC21.19■□□□□ 0.98
RIPK4P57078 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.19■□□□□ 0.98
RIPK4P57078 SPCS2P1-201ENST00000561636 679 ntBASIC21.19■□□□□ 0.98
RIPK4P57078 MPI-209ENST00000564003 1195 ntTSL 2 BASIC21.19■□□□□ 0.98
RIPK4P57078 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
RIPK4P57078 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
RIPK4P57078 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.19■□□□□ 0.98
RIPK4P57078 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
RIPK4P57078 FRMD6-AS1-201ENST00000617151 2229 ntBASIC21.19■□□□□ 0.98
RIPK4P57078 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC21.18■□□□□ 0.98
RIPK4P57078 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC21.18■□□□□ 0.98
RIPK4P57078 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC21.18■□□□□ 0.98
RIPK4P57078 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
RIPK4P57078 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
RIPK4P57078 AC241585.1-201ENST00000433527 519 ntBASIC21.18■□□□□ 0.98
RIPK4P57078 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC21.18■□□□□ 0.98
RIPK4P57078 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RIPK4P57078 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RIPK4P57078 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC21.17■□□□□ 0.98
RIPK4P57078 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC21.17■□□□□ 0.98
RIPK4P57078 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC21.17■□□□□ 0.98
RIPK4P57078 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 BCRP1-201ENST00000444246 691 ntBASIC21.17■□□□□ 0.98
RIPK4P57078 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC21.17■□□□□ 0.98
RIPK4P57078 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.17■□□□□ 0.98
RIPK4P57078 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.17■□□□□ 0.98
RIPK4P57078 KRT8P12-202ENST00000472924 1397 ntBASIC21.17■□□□□ 0.98
RIPK4P57078 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC21.17■□□□□ 0.98
RIPK4P57078 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RIPK4P57078 IMPDH1P4-201ENST00000445028 1534 ntBASIC21.17■□□□□ 0.98
RIPK4P57078 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RIPK4P57078 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms