Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.92■□□□□ 0.3
CDH6P55285 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.92■□□□□ 0.3
CDH6P55285 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
CDH6P55285 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
CDH6P55285 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.92■□□□□ 0.3
CDH6P55285 AL355306.1-201ENST00000415580 579 ntBASIC16.92■□□□□ 0.3
CDH6P55285 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.92■□□□□ 0.3
CDH6P55285 AL671277.1-201ENST00000429656 993 ntBASIC16.92■□□□□ 0.3
CDH6P55285 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.92■□□□□ 0.3
CDH6P55285 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.92■□□□□ 0.3
CDH6P55285 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.92■□□□□ 0.3
CDH6P55285 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.92■□□□□ 0.3
CDH6P55285 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.92■□□□□ 0.3
CDH6P55285 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC16.92■□□□□ 0.3
CDH6P55285 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.92■□□□□ 0.3
CDH6P55285 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CDH6P55285 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 AC112504.1-201ENST00000623415 1841 ntBASIC16.91■□□□□ 0.3
CDH6P55285 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.91■□□□□ 0.3
CDH6P55285 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC16.91■□□□□ 0.3
CDH6P55285 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.91■□□□□ 0.3
CDH6P55285 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 TFAMP1-201ENST00000412727 736 ntBASIC16.91■□□□□ 0.3
CDH6P55285 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
CDH6P55285 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.91■□□□□ 0.3
CDH6P55285 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.91■□□□□ 0.3
CDH6P55285 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.91■□□□□ 0.3
CDH6P55285 AL135744.1-201ENST00000565098 629 ntBASIC16.91■□□□□ 0.3
CDH6P55285 AL365330.1-201ENST00000607459 531 ntBASIC16.91■□□□□ 0.3
CDH6P55285 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.91■□□□□ 0.3
CDH6P55285 AC092902.6-201ENST00000641783 218 ntBASIC16.91■□□□□ 0.3
CDH6P55285 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 AKAP8P1-201ENST00000434743 1349 ntBASIC16.91■□□□□ 0.3
CDH6P55285 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
CDH6P55285 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
CDH6P55285 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.9■□□□□ 0.3
CDH6P55285 AC046158.3-201ENST00000624947 2558 ntBASIC16.9■□□□□ 0.3
CDH6P55285 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.9■□□□□ 0.3
CDH6P55285 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH6P55285 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
CDH6P55285 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
CDH6P55285 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH6P55285 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH6P55285 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.9■□□□□ 0.3
CDH6P55285 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH6P55285 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
CDH6P55285 MTDHP5-201ENST00000598980 586 ntBASIC16.9■□□□□ 0.3
CDH6P55285 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH6P55285 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.9■□□□□ 0.3
CDH6P55285 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CDH6P55285 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.9■□□□□ 0.3
CDH6P55285 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.9■□□□□ 0.3
CDH6P55285 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms