Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TNFSF9P41273 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
TNFSF9P41273 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TNFSF9P41273 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC17.52■□□□□ 0.39
TNFSF9P41273 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TNFSF9P41273 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.52■□□□□ 0.39
TNFSF9P41273 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TNFSF9P41273 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
TNFSF9P41273 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TNFSF9P41273 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
TNFSF9P41273 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
TNFSF9P41273 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 AC241585.1-201ENST00000433527 519 ntBASIC17.51■□□□□ 0.39
TNFSF9P41273 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.51■□□□□ 0.39
TNFSF9P41273 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC17.51■□□□□ 0.39
TNFSF9P41273 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 MPI-209ENST00000564003 1195 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.51■□□□□ 0.39
TNFSF9P41273 AC134407.2-201ENST00000625089 1978 ntBASIC17.51■□□□□ 0.39
TNFSF9P41273 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TNFSF9P41273 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TNFSF9P41273 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TNFSF9P41273 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.5■□□□□ 0.39
TNFSF9P41273 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 BASP1P1-201ENST00000430708 665 ntBASIC17.5■□□□□ 0.39
TNFSF9P41273 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.5■□□□□ 0.39
TNFSF9P41273 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.5■□□□□ 0.39
TNFSF9P41273 AC004890.2-204ENST00000481968 304 ntBASIC17.5■□□□□ 0.39
TNFSF9P41273 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.5■□□□□ 0.39
TNFSF9P41273 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
TNFSF9P41273 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TNFSF9P41273 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.5■□□□□ 0.39
TNFSF9P41273 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
TNFSF9P41273 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TNFSF9P41273 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms