Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 Z93015.1-201ENST00000451718 390 ntBASIC16.57■□□□□ 0.24
COL9A1P20849 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.57■□□□□ 0.24
COL9A1P20849 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.57■□□□□ 0.24
COL9A1P20849 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.57■□□□□ 0.24
COL9A1P20849 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC16.57■□□□□ 0.24
COL9A1P20849 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.57■□□□□ 0.24
COL9A1P20849 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL9A1P20849 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.57■□□□□ 0.24
COL9A1P20849 AL391001.1-201ENST00000602747 715 ntBASIC16.57■□□□□ 0.24
COL9A1P20849 AL158211.2-201ENST00000607282 395 ntBASIC16.57■□□□□ 0.24
COL9A1P20849 MALAT1-217ENST00000620902 352 ntTSL 3 BASIC16.57■□□□□ 0.24
COL9A1P20849 AC009084.3-201ENST00000623356 437 ntBASIC16.57■□□□□ 0.24
COL9A1P20849 AC079336.7-201ENST00000623428 1078 ntBASIC16.57■□□□□ 0.24
COL9A1P20849 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.57■□□□□ 0.24
COL9A1P20849 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
COL9A1P20849 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.57■□□□□ 0.24
COL9A1P20849 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
COL9A1P20849 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
COL9A1P20849 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL9A1P20849 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL9A1P20849 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
COL9A1P20849 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.56■□□□□ 0.24
COL9A1P20849 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 AL512652.2-201ENST00000625156 1716 ntBASIC16.56■□□□□ 0.24
COL9A1P20849 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.56■□□□□ 0.24
COL9A1P20849 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.56■□□□□ 0.24
COL9A1P20849 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC16.56■□□□□ 0.24
COL9A1P20849 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL9A1P20849 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC16.56■□□□□ 0.24
COL9A1P20849 CSH2-202ENST00000345366 598 ntTSL 5 BASIC16.56■□□□□ 0.24
COL9A1P20849 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.56■□□□□ 0.24
COL9A1P20849 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC16.56■□□□□ 0.24
COL9A1P20849 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.56■□□□□ 0.24
COL9A1P20849 GOSR1-204ENST00000451249 1231 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
COL9A1P20849 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC16.56■□□□□ 0.24
COL9A1P20849 AC134698.3-201ENST00000523880 214 ntBASIC16.56■□□□□ 0.24
COL9A1P20849 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.56■□□□□ 0.24
COL9A1P20849 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC16.56■□□□□ 0.24
COL9A1P20849 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 AP001542.1-201ENST00000591314 200 ntBASIC16.56■□□□□ 0.24
COL9A1P20849 NDUFV2P1-201ENST00000596415 907 ntBASIC16.56■□□□□ 0.24
COL9A1P20849 ACTG1P22-201ENST00000603793 1099 ntBASIC16.56■□□□□ 0.24
COL9A1P20849 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.56■□□□□ 0.24
COL9A1P20849 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL9A1P20849 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
COL9A1P20849 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 AL645728.1-201ENST00000366221 2101 ntBASIC16.55■□□□□ 0.24
COL9A1P20849 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.55■□□□□ 0.24
COL9A1P20849 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC16.55■□□□□ 0.24
COL9A1P20849 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.55■□□□□ 0.24
COL9A1P20849 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL9A1P20849 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.55■□□□□ 0.24
COL9A1P20849 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL9A1P20849 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.55■□□□□ 0.24
COL9A1P20849 AL591846.1-201ENST00000451736 433 ntBASIC16.55■□□□□ 0.24
COL9A1P20849 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
COL9A1P20849 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.55■□□□□ 0.24
COL9A1P20849 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.55■□□□□ 0.24
COL9A1P20849 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.55■□□□□ 0.24
COL9A1P20849 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.55■□□□□ 0.24
COL9A1P20849 AC008687.7-202ENST00000637404 953 ntBASIC16.55■□□□□ 0.24
COL9A1P20849 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL9A1P20849 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
COL9A1P20849 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.55■□□□□ 0.24
COL9A1P20849 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL9A1P20849 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 HTR7P1-202ENST00000624664 4411 ntBASIC16.54■□□□□ 0.24
COL9A1P20849 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL9A1P20849 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.54■□□□□ 0.24
COL9A1P20849 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COL9A1P20849 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms