Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VIMP08670 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
VIMP08670 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
VIMP08670 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 TOP3BP1-201ENST00000420768 1380 ntBASIC16.41■□□□□ 0.22
VIMP08670 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 AC005089.1-201ENST00000619486 2241 ntBASIC16.41■□□□□ 0.22
VIMP08670 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.41■□□□□ 0.22
VIMP08670 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 AC104581.4-201ENST00000623126 3052 ntBASIC16.41■□□□□ 0.22
VIMP08670 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VIMP08670 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.41■□□□□ 0.22
VIMP08670 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
VIMP08670 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC16.41■□□□□ 0.22
VIMP08670 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.41■□□□□ 0.22
VIMP08670 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.41■□□□□ 0.22
VIMP08670 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.41■□□□□ 0.22
VIMP08670 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
VIMP08670 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.41■□□□□ 0.22
VIMP08670 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VIMP08670 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VIMP08670 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.4■□□□□ 0.22
VIMP08670 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VIMP08670 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
VIMP08670 TSPY15P-201ENST00000457163 923 ntBASIC16.4■□□□□ 0.22
VIMP08670 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 RN7SL606P-201ENST00000472779 293 ntBASIC16.4■□□□□ 0.22
VIMP08670 AC009533.2-201ENST00000543664 586 ntBASIC16.4■□□□□ 0.22
VIMP08670 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.4■□□□□ 0.22
VIMP08670 AC145285.6-201ENST00000604632 637 ntBASIC16.4■□□□□ 0.22
VIMP08670 AC010654.1-201ENST00000615722 808 ntBASIC16.4■□□□□ 0.22
VIMP08670 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.4■□□□□ 0.22
VIMP08670 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.4■□□□□ 0.22
VIMP08670 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VIMP08670 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VIMP08670 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.22
VIMP08670 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.39■□□□□ 0.22
VIMP08670 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
VIMP08670 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
VIMP08670 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.39■□□□□ 0.21
VIMP08670 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
VIMP08670 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.39■□□□□ 0.21
VIMP08670 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
VIMP08670 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
VIMP08670 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VIMP08670 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.39■□□□□ 0.21
VIMP08670 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.39■□□□□ 0.21
VIMP08670 LINC00982-205ENST00000420957 435 ntBASIC16.39■□□□□ 0.21
VIMP08670 AL592071.1-201ENST00000611956 408 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 72.1 ms