Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.22■□□□□ 0.51
ACTN4O43707 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
ACTN4O43707 AC106730.1-201ENST00000566722 1090 ntBASIC18.22■□□□□ 0.51
ACTN4O43707 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
ACTN4O43707 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
ACTN4O43707 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
ACTN4O43707 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC18.22■□□□□ 0.51
ACTN4O43707 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.22■□□□□ 0.51
ACTN4O43707 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
ACTN4O43707 PMS2P7-201ENST00000506558 1336 ntBASIC18.22■□□□□ 0.51
ACTN4O43707 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
ACTN4O43707 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
ACTN4O43707 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 ZNF259P1-201ENST00000407656 1365 ntBASIC18.21■□□□□ 0.51
ACTN4O43707 AC126177.1-201ENST00000547829 2218 ntBASIC18.21■□□□□ 0.51
ACTN4O43707 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
ACTN4O43707 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 AC002056.1-201ENST00000395613 760 ntBASIC18.21■□□□□ 0.51
ACTN4O43707 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.21■□□□□ 0.51
ACTN4O43707 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.21■□□□□ 0.51
ACTN4O43707 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.21■□□□□ 0.51
ACTN4O43707 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC18.21■□□□□ 0.51
ACTN4O43707 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.21■□□□□ 0.51
ACTN4O43707 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 AC073389.1-201ENST00000595595 795 ntBASIC18.21■□□□□ 0.51
ACTN4O43707 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.21■□□□□ 0.51
ACTN4O43707 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
ACTN4O43707 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
ACTN4O43707 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.21■□□□□ 0.51
ACTN4O43707 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
ACTN4O43707 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.21■□□□□ 0.51
ACTN4O43707 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC18.21■□□□□ 0.51
ACTN4O43707 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
ACTN4O43707 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
ACTN4O43707 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
ACTN4O43707 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.2■□□□□ 0.5
ACTN4O43707 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
ACTN4O43707 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.2■□□□□ 0.5
ACTN4O43707 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.2■□□□□ 0.5
ACTN4O43707 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
ACTN4O43707 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
ACTN4O43707 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.2■□□□□ 0.5
ACTN4O43707 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC18.2■□□□□ 0.5
ACTN4O43707 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.2■□□□□ 0.5
ACTN4O43707 MED15P5-201ENST00000423150 992 ntBASIC18.2■□□□□ 0.5
ACTN4O43707 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.2■□□□□ 0.5
ACTN4O43707 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.2■□□□□ 0.5
ACTN4O43707 AC120114.3-201ENST00000611923 658 ntBASIC18.2■□□□□ 0.5
ACTN4O43707 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.2■□□□□ 0.5
ACTN4O43707 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
ACTN4O43707 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
ACTN4O43707 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.19■□□□□ 0.5
ACTN4O43707 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms