Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP1O15259 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
NPHP1O15259 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP1O15259 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC20.43■□□□□ 0.86
NPHP1O15259 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
NPHP1O15259 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.43■□□□□ 0.86
NPHP1O15259 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.43■□□□□ 0.86
NPHP1O15259 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.43■□□□□ 0.86
NPHP1O15259 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.43■□□□□ 0.86
NPHP1O15259 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.43■□□□□ 0.86
NPHP1O15259 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.43■□□□□ 0.86
NPHP1O15259 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
NPHP1O15259 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
NPHP1O15259 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
NPHP1O15259 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NPHP1O15259 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC20.43■□□□□ 0.86
NPHP1O15259 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.43■□□□□ 0.86
NPHP1O15259 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP1O15259 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP1O15259 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
NPHP1O15259 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC20.42■□□□□ 0.86
NPHP1O15259 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
NPHP1O15259 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC20.42■□□□□ 0.86
NPHP1O15259 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 AC079776.1-201ENST00000401540 1152 ntBASIC20.42■□□□□ 0.86
NPHP1O15259 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC20.42■□□□□ 0.86
NPHP1O15259 AP002490.2-201ENST00000524791 560 ntBASIC20.42■□□□□ 0.86
NPHP1O15259 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.42■□□□□ 0.86
NPHP1O15259 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
NPHP1O15259 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC20.42■□□□□ 0.86
NPHP1O15259 AC106886.1-201ENST00000568660 600 ntBASIC20.42■□□□□ 0.86
NPHP1O15259 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.42■□□□□ 0.86
NPHP1O15259 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
NPHP1O15259 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
NPHP1O15259 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP1O15259 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP1O15259 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC20.41■□□□□ 0.86
NPHP1O15259 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.41■□□□□ 0.86
NPHP1O15259 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC20.41■□□□□ 0.86
NPHP1O15259 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP1O15259 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC20.41■□□□□ 0.86
NPHP1O15259 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
NPHP1O15259 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
NPHP1O15259 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC20.41■□□□□ 0.86
NPHP1O15259 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.41■□□□□ 0.86
NPHP1O15259 AL139010.1-201ENST00000454878 894 ntBASIC20.41■□□□□ 0.86
NPHP1O15259 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 AC061975.2-201ENST00000581722 295 ntBASIC20.41■□□□□ 0.86
NPHP1O15259 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.41■□□□□ 0.86
NPHP1O15259 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.41■□□□□ 0.86
NPHP1O15259 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 TNRC18P3-201ENST00000441896 2691 ntBASIC20.41■□□□□ 0.86
NPHP1O15259 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
NPHP1O15259 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.41■□□□□ 0.86
NPHP1O15259 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
NPHP1O15259 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
NPHP1O15259 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms