Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXN3O00409 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXN3O00409 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXN3O00409 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXN3O00409 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXN3O00409 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
FOXN3O00409 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
FOXN3O00409 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
FOXN3O00409 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
FOXN3O00409 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
FOXN3O00409 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXN3O00409 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXN3O00409 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXN3O00409 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
FOXN3O00409 AC245100.5-201ENST00000452108 331 ntBASIC17.39■□□□□ 0.37
FOXN3O00409 AC105233.2-201ENST00000523697 349 ntBASIC17.39■□□□□ 0.37
FOXN3O00409 FAM86C2P-203ENST00000528684 1004 ntBASIC17.39■□□□□ 0.37
FOXN3O00409 AF228730.5-201ENST00000530288 346 ntBASIC17.39■□□□□ 0.37
FOXN3O00409 LINC01225-203ENST00000563550 1244 ntBASIC17.39■□□□□ 0.37
FOXN3O00409 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.39■□□□□ 0.37
FOXN3O00409 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXN3O00409 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXN3O00409 C20orf181-201ENST00000623918 480 ntBASIC17.39■□□□□ 0.37
FOXN3O00409 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXN3O00409 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXN3O00409 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
FOXN3O00409 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 VILL-207ENST00000465644 1857 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXN3O00409 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXN3O00409 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
FOXN3O00409 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 YBX2P1-201ENST00000394192 760 ntBASIC17.38■□□□□ 0.37
FOXN3O00409 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.38■□□□□ 0.37
FOXN3O00409 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.38■□□□□ 0.37
FOXN3O00409 AC026120.1-201ENST00000611536 926 ntBASIC17.38■□□□□ 0.37
FOXN3O00409 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
FOXN3O00409 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
FOXN3O00409 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXN3O00409 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
FOXN3O00409 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXN3O00409 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.37■□□□□ 0.37
FOXN3O00409 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
FOXN3O00409 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
FOXN3O00409 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
FOXN3O00409 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
FOXN3O00409 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms