Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 SPTLC1P1-201ENST00000447199 261 ntBASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 HLA-V-204ENST00000476601 1289 ntBASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 GPER1-207ENST00000619052 571 ntTSL 2 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 TOP3BP1-201ENST00000420768 1380 ntBASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PDZRN3Q9UPQ7 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AC105233.2-201ENST00000523697 349 ntBASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AF228730.5-201ENST00000530288 346 ntBASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 MIR4492-201ENST00000581627 80 ntBASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AL512652.2-201ENST00000625156 1716 ntBASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 AC007950.2-201ENST00000615045 2347 ntBASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PDZRN3Q9UPQ7 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 HARS-204ENST00000438307 1789 ntTSL 2 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 KRT17P7-201ENST00000451704 1104 ntBASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PDZRN3Q9UPQ7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms