Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLCF1Q9UBD9 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 SERBP1P5-201ENST00000510079 1181 ntBASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 ZNF890P-202ENST00000530367 1156 ntBASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 AC009118.2-201ENST00000613275 655 ntBASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 KRT8P12-202ENST00000472924 1397 ntBASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CLCF1Q9UBD9 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 FLJ38576-201ENST00000623820 2459 ntBASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AC099398.1-201ENST00000567919 2776 ntBASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AL592424.1-201ENST00000563624 1536 ntBASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 COX20P2-201ENST00000452636 358 ntBASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AL512361.1-201ENST00000554200 418 ntBASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AC009407.1-201ENST00000568958 598 ntBASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AC008738.7-201ENST00000609744 511 ntBASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CLCF1Q9UBD9 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CLCF1Q9UBD9 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms