Protein–RNA interactions for Protein: Q9BZS1

FOXP3, Forkhead box protein P3, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXP3Q9BZS1 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 CRYGEP-201ENST00000412192 528 ntBASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 AC211486.1-202ENST00000416371 468 ntBASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 AC108073.2-201ENST00000464002 357 ntBASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 AC211476.1-201ENST00000503899 468 ntBASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 AC018845.2-201ENST00000568326 409 ntBASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
FOXP3Q9BZS1 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.83■□□□□ 0.29
FOXP3Q9BZS1 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.83■□□□□ 0.29
FOXP3Q9BZS1 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
FOXP3Q9BZS1 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
FOXP3Q9BZS1 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 AC027796.2-201ENST00000575326 344 ntBASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 AL596442.2-201ENST00000610240 980 ntBASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 GGTLC5P-201ENST00000617623 998 ntBASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
FOXP3Q9BZS1 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
FOXP3Q9BZS1 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms