Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 AL022342.1-201ENST00000400363 863 ntBASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRIM56Q9BRZ2 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 UNC93B6-202ENST00000528242 690 ntBASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 AL773604.1-201ENST00000617417 272 ntBASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
TRIM56Q9BRZ2 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
TRIM56Q9BRZ2 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
TRIM56Q9BRZ2 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
TRIM56Q9BRZ2 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.64■□□□□ 0.26
TRIM56Q9BRZ2 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 RNU1-129P-201ENST00000384064 167 ntBASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 AC009947.1-201ENST00000444350 727 ntBASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 CXCL1P1-201ENST00000502804 216 ntBASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.64■□□□□ 0.25
TRIM56Q9BRZ2 U1.21-201ENST00000580816 167 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms