Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 U1.21-201ENST00000580816 167 ntBASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 CLEC4GP1-201ENST00000596555 870 ntBASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
CCDC54Q8NEL0 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AC108073.2-201ENST00000464002 357 ntBASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AL031055.1-201ENST00000606362 631 ntBASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 OR2I1P-209ENST00000641730 5365 ntBASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.26□□□□□ -0.13
CCDC54Q8NEL0 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 AC007950.2-201ENST00000615045 2347 ntBASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 AC005622.1-201ENST00000636801 1703 ntBASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 MED22-202ENST00000371999 987 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.25□□□□□ -0.13
CCDC54Q8NEL0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms